Indole
Names | |
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Preferred IUPAC name
1H-Indole[1] | |
Other names
2,3-Benzopyrrole, ketole,
1-benzazole | |
Identifiers | |
3D model (JSmol)
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3DMet | |
107693 | |
ChEBI | |
ChEMBL | |
ChemSpider | |
DrugBank | |
ECHA InfoCard | 100.004.019 |
EC Number |
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3477 | |
KEGG | |
PubChem CID
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RTECS number |
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UNII | |
CompTox Dashboard (EPA)
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Properties | |
C8H7N | |
Molar mass | 117.151 g·mol−1 |
Appearance | White solid |
Odor | Fecal or jasmine like (at extremely low concentrations) |
Density | 1.1747 g/cm3, solid |
Melting point | 52 to 54 °C (126 to 129 °F; 325 to 327 K) |
Boiling point | 253 to 254 °C (487 to 489 °F; 526 to 527 K) |
0.19 g/100 ml (20 °C) Soluble in hot water | |
Acidity (pKa) | 16.2 (21.0 in DMSO) |
Basicity (pKb) | 17.6 |
-85.0·10−6 cm3/mol | |
Structure | |
Pna21 | |
Planar | |
2.11 D in benzene | |
Hazards | |
Occupational safety and health (OHS/OSH): | |
Main hazards
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Skin sensitising |
GHS labelling: | |
Danger | |
H302, H311 | |
P264, P270, P280, P301+P312, P302+P352, P312, P322, P330, P361, P363, P405, P501 | |
Flash point | 121 °C (250 °F; 394 K) |
Safety data sheet (SDS) | [1] |
Related compounds | |
Other cations
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Indolium |
Related aromatic
compounds |
benzene, benzofuran, carbazole, carboline, indene, benzothiophene, indoline, isatin, methylindole, oxindole, pyrrole, skatole, benzophosphole |
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
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Indole is an organic compound with the formula C6H4CCNH3. Indole is classified as an aromatic heterocycle. It has a bicyclic structure, consisting of a six-membered benzene ring fused to a five-membered pyrrole ring. Indoles are derivatives of indole where one or more of the hydrogen atoms have been replaced by substituent groups. Indoles are widely distributed in nature, most notably as amino acid tryptophan and neurotransmitter serotonin.[2]
General properties and occurrence
[edit]Indole is a solid at room temperature. It occurs naturally in human feces and has an intense fecal odor. At very low concentrations, however, it has a flowery smell,[3] and is a constituent of many perfumes. It also occurs in coal tar. It has been identified in cannabis.[4] It is the main volatile compound in stinky tofu.[5]
When indole is a substituent on a larger molecule, it is called an indolyl group by systematic nomenclature.
Indole undergoes electrophilic substitution, mainly at position 3 (see diagram in right margin). Substituted indoles are structural elements of (and for some compounds, the synthetic precursors for) the tryptophan-derived tryptamine alkaloids, which includes the neurotransmitter serotonin and the hormone[6] melatonin, as well as the naturally occurring psychedelic drugs dimethyltryptamine and psilocybin. Other indolic compounds include the plant hormone auxin (indolyl-3-acetic acid, IAA), tryptophol, the anti-inflammatory drug indomethacin, and the betablocker pindolol.
The name indole is a portmanteau of the words indigo and oleum, since indole was first isolated by treatment of the indigo dye with oleum.
History
[edit]Indole chemistry began to develop with the study of the dye indigo. Indigo can be converted to isatin and then to oxindole. Then, in 1866, Adolf von Baeyer reduced oxindole to indole using zinc dust.[7] In 1869, he proposed a formula for indole.[8]
Certain indole derivatives were important dyestuffs until the end of the 19th century. In the 1930s, interest in indole intensified when it became known that the indole substituent is present in many important alkaloids, known as indole alkaloids (e.g., tryptophan and auxins), and it remains an active area of research today.[9]
Biosynthesis and function
[edit]Indole is biosynthesized in the shikimate pathway via anthranilate.[2] It is an intermediate in the biosynthesis of tryptophan, where it stays inside the tryptophan synthase molecule between the removal of 3-phospho-glyceraldehyde and the condensation with serine. When indole is needed in the cell, it is usually produced from tryptophan by tryptophanase.[10]
As an intercellular signal molecule, indole regulates various aspects of bacterial physiology, including spore formation, plasmid stability, resistance to drugs, biofilm formation, and virulence.[11] A number of indole derivatives have important cellular functions, including neurotransmitters such as serotonin.[2]
Tryptophan metabolism by human gut microbiota (
)
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Detection methods
[edit]Common classical methods applied for the detection of extracellular and environmental indoles, are Salkowski, Kovács, Ehrlich’s reagent assays and HPLC.[16][17][18] For intracellular indole detection and measurement genetically encoded indole-responsive biosensor is applicable.[19]
Medical applications
[edit]Indoles and their derivatives are promising against tuberculosis, malaria, diabetes, cancer, migraines, convulsions, hypertension, bacterial infections of methicillin-resistant Staphylococcus aureus (MRSA) and even viruses.[20][21][22][23][24]
Synthetic routes
[edit]Indole and its derivatives can also be synthesized by a variety of methods.[25][26][27]
The main industrial routes start from aniline via vapor-phase reaction with ethylene glycol in the presence of catalysts:
In general, reactions are conducted between 200 and 500 °C. Yields can be as high as 60%. Other precursors to indole include formyltoluidine, 2-ethylaniline, and 2-(2-nitrophenyl)ethanol, all of which undergo cyclizations.[28]
Leimgruber–Batcho indole synthesis
[edit]The Leimgruber–Batcho indole synthesis is an efficient method of synthesizing indole and substituted indoles.[29] Originally disclosed in a patent in 1976, this method is high-yielding and can generate substituted indoles. This method is especially popular in the pharmaceutical industry, where many pharmaceutical drugs are made up of specifically substituted indoles.
Fischer indole synthesis
[edit]One of the oldest and most reliable methods for synthesizing substituted indoles is the Fischer indole synthesis, developed in 1883 by Emil Fischer. Although the synthesis of indole itself is problematic using the Fischer indole synthesis, it is often used to generate indoles substituted in the 2- and/or 3-positions. Indole can still be synthesized, however, using the Fischer indole synthesis by reacting phenylhydrazine with pyruvic acid followed by decarboxylation of the formed indole-2-carboxylic acid. This has also been accomplished in a one-pot synthesis using microwave irradiation.[30]
Other indole-forming reactions
[edit]- Bartoli indole synthesis
- Bischler–Möhlau indole synthesis
- Cadogan-Sundberg indole synthesis
- Fukuyama indole synthesis
- Gassman indole synthesis
- Hemetsberger indole synthesis
- Larock indole synthesis
- Madelung synthesis
- Nenitzescu indole synthesis
- Reissert indole synthesis
- Baeyer–Emmerling indole synthesis
- In the Diels–Reese reaction[31][32] dimethyl acetylenedicarboxylate reacts with 1,2-diphenylhydrazine to an adduct, which in xylene gives dimethyl indole-2,3-dicarboxylate and aniline. With other solvents, other products are formed: with glacial acetic acid a pyrazolone, and with pyridine a quinoline.
Chemical reactions of indole
[edit]Basicity
[edit]Unlike most amines, indole is not basic: just like pyrrole, the aromatic character of the ring means that the lone pair of electrons on the nitrogen atom is not available for protonation.[33] Strong acids such as hydrochloric acid can, however, protonate indole. Indole is primarily protonated at the C3, rather than N1, owing to the enamine-like reactivity of the portion of the molecule located outside of the benzene ring. The protonated form has a pKa of −3.6. The sensitivity of many indolic compounds (e.g., tryptamines) under acidic conditions is caused by this protonation.
Electrophilic substitution
[edit]The most reactive position on indole for electrophilic aromatic substitution is C3, which is 1013 times more reactive than benzene. For example, it is alkylated by phosphorylated serine in the biosynthesis of the amino acid tryptophan. Vilsmeier–Haack formylation of indole[34] will take place at room temperature exclusively at C3.
Since the pyrrolic ring is the most reactive portion of indole, electrophilic substitution of the carbocyclic (benzene) ring generally takes place only after N1, C2, and C3 are substituted. A noteworthy exception occurs when electrophilic substitution is carried out in conditions sufficiently acidic to exhaustively protonate C3. In this case, C5 is the most common site of electrophilic attack.[35]
Gramine, a useful synthetic intermediate, is produced via a Mannich reaction of indole with dimethylamine and formaldehyde. It is the precursor to indole-3-acetic acid and synthetic tryptophan.
N–H acidity and organometallic indole anion complexes
[edit]The N–H center has a pKa of 21 in DMSO, so that very strong bases such as sodium hydride or n-butyl lithium and water-free conditions are required for complete deprotonation. The resulting organometalic derivatives can react in two ways. The more ionic salts such as the sodium or potassium compounds tend to react with electrophiles at nitrogen-1, whereas the more covalent magnesium compounds (indole Grignard reagents) and (especially) zinc complexes tend to react at carbon 3 (see figure below). In analogous fashion, polar aprotic solvents such as DMF and DMSO tend to favour attack at the nitrogen, whereas nonpolar solvents such as toluene favour C3 attack.[36]
Carbon acidity and C2 lithiation
[edit]After the N–H proton, the hydrogen at C2 is the next most acidic proton on indole. Reaction of N-protected indoles with butyl lithium or lithium diisopropylamide results in lithiation exclusively at the C2 position. This strong nucleophile can then be used as such with other electrophiles.
Bergman and Venemalm developed a technique for lithiating the 2-position of unsubstituted indole,[37] as did Katritzky.[38]
Oxidation of indole
[edit]Due to the electron-rich nature of indole, it is easily oxidized. Simple oxidants such as N-bromosuccinimide will selectively oxidize indole 1 to oxindole (4 and 5).
Cycloadditions of indole
[edit]Only the C2–C3 pi bond of indole is capable of cycloaddition reactions. Intramolecular variants are often higher-yielding than intermolecular cycloadditions. For example, Padwa et al.[39] have developed this Diels-Alder reaction to form advanced strychnine intermediates. In this case, the 2-aminofuran is the diene, whereas the indole is the dienophile. Indoles also undergo intramolecular [2+3] and [2+2] cycloadditions.
Despite mediocre yields, intermolecular cycloadditions of indole derivatives have been well documented.[40][41][42][43] One example is the Pictet-Spengler reaction between tryptophan derivatives and aldehydes,[44] which produces a mixture of diastereomers, leading to reduced yield of the desired product.
Hydrogenation
[edit]Indoles are susceptible to hydrogenation of the imine subunit[45] to give indolines.
See also
[edit]- Indole-3-butyric acid
- Indole test
- Isoindole
- Isoindoline
- Skatole (3-methylindole)
References
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- ^ Baeyer, A. (1866). "Ueber die Reduction aromatischer Verbindungen mittelst Zinkstaub" [On the reduction of aromatic compounds by means of zinc dust]. Annalen der Chemie und Pharmacie. 140 (3): 295–296. doi:10.1002/jlac.18661400306.
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- ^ Stephanopoulos, George; Aristidou, Aristos A.; Nielsen, Jens (1998-10-17). Metabolic Engineering: Principles and Methodologies. Academic Press. p. 251. ISBN 9780080536286.
- ^ Lee, Jin-Hyung; Lee, Jintae (2010). "Indole as an intercellular signal in microbial communities". FEMS Microbiology Reviews. 34 (4): 426–44. doi:10.1111/j.1574-6976.2009.00204.x. ISSN 0168-6445. PMID 20070374.
- ^ a b c d e f g h i Zhang LS, Davies SS (April 2016). "Microbial metabolism of dietary components to bioactive metabolites: opportunities for new therapeutic interventions". Genome Med. 8 (1): 46. doi:10.1186/s13073-016-0296-x. PMC 4840492. PMID 27102537.
Lactobacillus spp. convert tryptophan to indole-3-aldehyde (I3A) through unidentified enzymes [125]. Clostridium sporogenes convert tryptophan to IPA [6], likely via a tryptophan deaminase. ... IPA also potently scavenges hydroxyl radicals
Table 2: Microbial metabolites: their synthesis, mechanisms of action, and effects on health and disease
Figure 1: Molecular mechanisms of action of indole and its metabolites on host physiology and disease - ^ Wikoff WR, Anfora AT, Liu J, Schultz PG, Lesley SA, Peters EC, Siuzdak G (March 2009). "Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites". Proc. Natl. Acad. Sci. U.S.A. 106 (10): 3698–3703. Bibcode:2009PNAS..106.3698W. doi:10.1073/pnas.0812874106. PMC 2656143. PMID 19234110.
Production of IPA was shown to be completely dependent on the presence of gut microflora and could be established by colonization with the bacterium Clostridium sporogenes.
IPA metabolism diagram - ^ "3-Indolepropionic acid". Human Metabolome Database. University of Alberta. Retrieved 12 June 2018.
- ^ Chyan YJ, Poeggeler B, Omar RA, Chain DG, Frangione B, Ghiso J, Pappolla MA (July 1999). "Potent neuroprotective properties against the Alzheimer beta-amyloid by an endogenous melatonin-related indole structure, indole-3-propionic acid". J. Biol. Chem. 274 (31): 21937–21942. doi:10.1074/jbc.274.31.21937. PMID 10419516. S2CID 6630247.
[Indole-3-propionic acid (IPA)] has previously been identified in the plasma and cerebrospinal fluid of humans, but its functions are not known. ... In kinetic competition experiments using free radical-trapping agents, the capacity of IPA to scavenge hydroxyl radicals exceeded that of melatonin, an indoleamine considered to be the most potent naturally occurring scavenger of free radicals. In contrast with other antioxidants, IPA was not converted to reactive intermediates with pro-oxidant activity.
- ^ Ehmann, Axel (1977-02-11). "The van URK-Salkowski reagent — a sensitive and specific chromogenic reagent for silica gel thin-layer chromatographic detection and identification of indole derivatives". Journal of Chromatography A. 132 (2): 267–276. doi:10.1016/S0021-9673(00)89300-0. ISSN 0021-9673. PMID 188858.
- ^ Darkoh, Charles; Chappell, Cynthia; Gonzales, Christopher; Okhuysen, Pablo (December 2015). Schloss, P. D. (ed.). "A Rapid and Specific Method for the Detection of Indole in Complex Biological Samples". Applied and Environmental Microbiology. 81 (23): 8093–8097. Bibcode:2015ApEnM..81.8093D. doi:10.1128/AEM.02787-15. ISSN 0099-2240. PMC 4651089. PMID 26386049.
- ^ Gilbert, Sarah; Xu, Jenny; Acosta, Kenneth; Poulev, Alexander; Lebeis, Sarah; Lam, Eric (2018). "Bacterial Production of Indole Related Compounds Reveals Their Role in Association Between Duckweeds and Endophytes". Frontiers in Chemistry. 6: 265. Bibcode:2018FrCh....6..265G. doi:10.3389/fchem.2018.00265. ISSN 2296-2646. PMC 6052042. PMID 30050896.
- ^ Matulis, Paulius; Kutraite, Ingrida; Augustiniene, Ernesta; Valanciene, Egle; Jonuskiene, Ilona; Malys, Naglis (January 2022). "Development and Characterization of Indole-Responsive Whole-Cell Biosensor Based on the Inducible Gene Expression System from Pseudomonas putida KT2440". International Journal of Molecular Sciences. 23 (9): 4649. doi:10.3390/ijms23094649. ISSN 1422-0067. PMC 9105386. PMID 35563040.
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- ^ Qin, Hua-Li; Liu, Jing; Fang, Wan-Yin; Ravindar, L.; Rakesh, K. P. (15 May 2020). "Indole-based derivatives as potential antibacterial activity against methicillin-resistance Staphylococcus aureus (MRSA)". European Journal of Medicinal Chemistry. 194: 112245. doi:10.1016/j.ejmech.2020.112245. ISSN 0223-5234. PMID 32220687. S2CID 214695328.
- ^ Thanikachalam, Punniyakoti Veeraveedu; Maurya, Rahul Kumar; Garg, Vishali; Monga, Vikramdeep (15 October 2019). "An insight into the medicinal perspective of synthetic analogs of indole: A review". European Journal of Medicinal Chemistry. 180: 562–612. doi:10.1016/j.ejmech.2019.07.019. ISSN 0223-5234. PMID 31344615. S2CID 198911553.
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- ^ Cacchi, S.; Fabrizi, G. (2005). "Synthesis and Functionalization of Indoles Through Palladium-catalyzed Reactions". Chem. Rev. 105 (7): 2873–2920. doi:10.1021/cr040639b. hdl:11573/232340. PMID 16011327.
- ^ Humphrey, G. R.; Kuethe, J. T. (2006). "Practical Methodologies for the Synthesis of Indoles". Chem. Rev. 106 (7): 2875–2911. doi:10.1021/cr0505270. PMID 16836303.
- ^ Collin, Gerd; Höke, Hartmut. "Indole". Ullmann's Encyclopedia of Industrial Chemistry. Weinheim: Wiley-VCH. doi:10.1002/14356007.a14_167. ISBN 978-3527306732.
- ^ "Indol NSP" (PDF).
- ^ Bratulescu, George (2008). "A new and efficient one-pot synthesis of indoles". Tetrahedron Letters. 49 (6): 984. doi:10.1016/j.tetlet.2007.12.015.
- ^ Diels, Otto; Reese, Johannes (1934). "Synthesen in der hydroaromatischen Reihe. XX. Über die Anlagerung von Acetylen-dicarbonsäureester an Hydrazobenzol" [Syntheses in the hydroaromatic series. XX. The addition of acetylene dicarboxylic acid ester to hydrazobenzene]. Justus Liebig's Annalen der Chemie. 511: 168. doi:10.1002/jlac.19345110114.
- ^ Huntress, Ernest H.; Bornstein, Joseph; Hearon, William M. (1956). "An Extension of the Diels-Reese Reaction". J. Am. Chem. Soc. 78 (10): 2225. doi:10.1021/ja01591a055.
- ^ Dewick, Paul M. (2013-03-20). Essentials of Organic Chemistry: For Students of Pharmacy, Medicinal Chemistry and Biological Chemistry. John Wiley & Sons. p. 143. ISBN 9781118681961.
- ^ James, P. N.; Snyder, H. R. (1959). "Indole-3-aldehyde". Organic Syntheses. 39: 30. doi:10.15227/orgsyn.039.0030.
- ^ Noland, W. E.; Rush, K. R.; Smith, L. R. (1966). "Nitration of Indoles. IV. The Nitration of 2-Phenylindole". J. Org. Chem. 31: 65–69. doi:10.1021/jo01339a013.
- ^ Heaney, H.; Ley, S. V. (1974). "1-Benzylindole". Organic Syntheses. 54: 58. doi:10.15227/orgsyn.054.0058.
- ^ Bergman, J.; Venemalm, L. (1992). "Efficient synthesis of 2-chloro-, 2-bromo-, and 2-iodoindole". J. Org. Chem. 57 (8): 2495. doi:10.1021/jo00034a058.
- ^ Katritzky, Alan R.; Li, Jianqing; Stevens, Christian V. (1995). "Facile Synthesis of 2-Substituted Indoles and Indolo[3,2-b]carbazoles from 2-(Benzotriazol-1-ylmethyl)indole". J. Org. Chem. 60 (11): 3401–3404. doi:10.1021/jo00116a026.
- ^ Lynch, S. M.; Bur, S. K.; Padwa, A. (2002). "Intramolecular Amidofuran Cycloadditions across an Indole π-Bond: An Efficient Approach to the Aspidosperma and Strychnos ABCE Core". Org. Lett. 4 (26): 4643–5. doi:10.1021/ol027024q. PMID 12489950.
- ^ Cox, E. D.; Cook, J. M. (1995). "The Pictet-Spengler condensation: a new direction for an old reaction". Chemical Reviews. 95 (6): 1797–1842. doi:10.1021/cr00038a004.
- ^ Gremmen, C.; Willemse, B.; Wanner, M. J.; Koomen, G.-J. (2000). "Enantiopure Tetrahydro-β-carbolines via Pictet–Spengler Reactions with N-Sulfinyl Tryptamines". Org. Lett. 2 (13): 1955–1958. doi:10.1021/ol006034t. PMID 10891200.
- ^ Larghi, Enrique L.; Amongero, Marcela; Bracca, Andrea B. J.; Kaufman, Teodoro S. (2005). "The intermolecular Pictet–Spengler condensation with chiral carbonyl derivatives in the stereoselective syntheses of optically-active isoquinoline and indole alkaloids". Arkivoc. RL-1554K (12): 98–153. doi:10.3998/ark.5550190.0006.c09. hdl:2027/spo.5550190.0006.c09.
- ^ Kaufman, Teodoro S. (2005). "Synthesis of Optically-Active Isoquinoline and Indole Alkaloids Employing the Pictet–Spengler Condensation with Removable Chiral Auxiliaries Bound to Nitrogen". In Vicario, J. L. (ed.). New Methods for the Asymmetric Synthesis of Nitrogen Heterocycles. Thiruvananthapuram: Research SignPost. pp. 99–147. ISBN 978-81-7736-278-7.
- ^ Bonnet, D.; Ganesan, A. (2002). "Solid-Phase Synthesis of Tetrahydro-β-carbolinehydantoins via the N-Acyliminium Pictet–Spengler Reaction and Cyclative Cleavage". J. Comb. Chem. 4 (6): 546–548. doi:10.1021/cc020026h. PMID 12425597.
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General references
[edit]- Houlihan, W. J., ed. (1972). Indoles Part One. New York: Wiley Interscience.[ISBN missing]
- Sundberg, R. J. (1996). Indoles. San Diego: Academic Press. ISBN 978-0-12-676945-6.
- Joule, J. A.; Mills, K. (2000). Heterocyclic Chemistry. Oxford, UK: Blackwell Science. ISBN 978-0-632-05453-4.
- Joule, J. (2000). E. J., Thomas (ed.). Science of Synthesis. Vol. 10. Stuttgart: Thieme. p. 361. ISBN 978-3-13-112241-4.
- Schoenherr, H.; Leighton, J. L. (2012). "Direct and Highly Enantioselective Iso-Pictet-Spengler Reactions with α-Ketoamides: Access to Underexplored Indole Core Structures". Org. Lett. 14 (10): 2610–3. doi:10.1021/ol300922b. PMID 22540677.
External links
[edit]- Synthesis of indoles (overview of recent methods)
- Synthesis and properties of indoles at chemsynthesis.com